Package: netmeta 3.0-0

netmeta: Network Meta-Analysis using Frequentist Methods

A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis": - frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>; - additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>; - network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>; - rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>; - ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to Rücker & Schwarzer (2015) <doi:10.1186/s12874-015-0060-8>; - split direct and indirect evidence to check consistency (Dias et al., 2010) <doi:10.1002/sim.3767>, (Efthimiou et al., 2019) <doi:10.1002/sim.8158>; - league table with network meta-analysis results; - 'comparison-adjusted' funnel plot (Chaimani & Salanti, 2012) <doi:10.1002/jrsm.57>; - net heat plot and design-based decomposition of Cochran's Q according to Krahn et al. (2013) <doi:10.1186/1471-2288-13-35>; - measures characterizing the flow of evidence between two treatments by König et al. (2013) <doi:10.1002/sim.6001>; - automated drawing of network graphs described in Rücker & Schwarzer (2016) <doi:10.1002/jrsm.1143>; - partial order of treatment rankings ('poset') and Hasse diagram for 'poset' (Carlsen & Bruggemann, 2014) <doi:10.1002/cem.2569>; (Rücker & Schwarzer, 2017) <doi:10.1002/jrsm.1270>; - contribution matrix as described in Papakonstantinou et al. (2018) <doi:10.12688/f1000research.14770.3> and Davies et al. (2022) <doi:10.1002/sim.9346>; - subgroup network meta-analysis.

Authors:Gerta Rücker [aut], Ulrike Krahn [aut], Jochem König [aut], Orestis Efthimiou [aut], Annabel Davies [aut], Theodoros Papakonstantinou [aut], Guido Schwarzer [aut, cre]

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NEWS

# Install 'netmeta' in R:
install.packages('netmeta', repos = c('https://guido-s.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/guido-s/netmeta/issues

Datasets:
  • Baker2009 - Network meta-analysis of pharmacologic treatments for chronic obstructive pulmonary disease
  • Dogliotti2014 - Network meta-analysis of antithrombotic treatments in patients with non-valvular atrial fibrillation
  • Dong2013 - Network meta-analysis for chronic obstructive pulmonary disease
  • Franchini2012 - Network meta-analysis of treatments for Parkinson's disease
  • Gurusamy2011 - Network meta-analysis on blood loss during liver transplantation
  • Linde2015 - Network meta-analysis of treatments for depression
  • Linde2016 - Network meta-analysis of primary care depression treatments
  • Senn2013 - Network meta-analysis in diabetes
  • Stowe2010 - Network meta-analysis of adjuvant treatments to levodopa therapy for Parkinson's disease
  • Woods2010 - Count statistics of survival data
  • dietaryfat - Network meta-analysis of dietary fat
  • parkinson - Network meta-analysis of treatments for Parkinson's disease
  • smokingcessation - Network meta-analysis of interventions for smoking cessation

On CRAN:

meta-analysisnetwork-meta-analysisrstudio

10.77 score 30 stars 8 packages 176 scripts 4.7k downloads 136 mentions 33 exports 61 dependencies

Last updated 1 days agofrom:c910cdc8ef. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-winNOTENov 21 2024
R-4.5-linuxNOTENov 21 2024
R-4.4-winNOTENov 21 2024
R-4.4-macNOTENov 21 2024
R-4.3-winNOTENov 21 2024
R-4.3-macNOTENov 21 2024

Exports:combinationscompscreateCdecomp.designdiscombhassehatmatrixheatplotinvmatnetbindnetcombnetcomparisonnetcomplexnetconnectionnetcontribnetdistancenetgraphnetheatnetimpactnetleaguenetmatrixnetmeasuresnetmetanetmetabinnetpairwisenetposetnetranknetsplitnettablerankogramsettings.netmetasubgrouptreats

Dependencies:abindbitbit64bootclicliprcolorspaceCompQuadFormcpp11crayondplyrfansifarvergenericsggplot2gluegtablehmsisobandlabelinglatticelifecyclelme4magicmagrittrMASSmathjaxrMatrixmetametadatmetaformgcvminqamunsellnlmenloptrnumDerivpbapplypillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppRcppEigenreadrrlangscalesstringistringrtibbletidyselecttzdbutf8vctrsviridisLitevroomwithrxml2

netmeta: An R package for Network Meta-Analysis using Frequentist Methods

Rendered fromnetmeta.pdf.asisusingR.rsp::asison Nov 21 2024.

Last update: 2023-05-05
Started: 2023-05-05

Readme and manuals

Help Manual

Help pageTopics
netmeta: Brief overview of methods and general hintsnetmeta-package
Create a data frame from an object of class netconnectionas.data.frame.netconnection
Create a data frame from an object of class netmetaas.data.frame.netmeta
Network meta-analysis of pharmacologic treatments for chronic obstructive pulmonary diseaseBaker2009
Auxiliary functions for component network meta-analysiscombinations createC createC.default createC.matrix createC.netcomb createC.netconnection createC.netmeta
Design-based decomposition of Cochran's Q in network meta-analysisdecomp.design
Network meta-analysis of dietary fatdietaryfat
(disconnected networks)discomb
Network meta-analysis of antithrombotic treatments in patients with non-valvular atrial fibrillationDogliotti2014
Network meta-analysis for chronic obstructive pulmonary diseaseDong2013
Forest plot showing results of two or more network meta-analysesforest.netbind plot.netbind
Forest plot for additive network meta-analysisforest.netcomb plot.netcomb
Forest plot for complex interventions in component network meta-analysisforest.netcomparison plot.netcomparison
Forest plot for complex interventions in component network meta-analysisforest.netcomplex plot.netcomplex
Forest plot for network meta-analysisforest.netmeta plot.netmeta
Forest plot for direct and indirect evidenceforest.netsplit plot.netsplit
Forest plot showing results of network meta-analysis with subgroupsforest.subgroup.netmeta plot.subgroup.netmeta
Network meta-analysis of treatments for Parkinson's diseaseFranchini2012 parkinson
'Comparison-adjusted' funnel plotfunnel.netmeta
Network meta-analysis on blood loss during liver transplantationGurusamy2011
Hasse diagramhasse
Derive hat matrix from network meta-analysishatmatrix print.hatmatrix
Generic function for heat plotsheatplot
Heat Plotheatplot.netmeta
Moore-Penrose Pseudoinverse of a Matrixinvmat
Network meta-analysis of treatments for depressionLinde2015
Network meta-analysis of primary care depression treatmentsLinde2016
Merge pairwise object with additional datamerge.pairwise
Test of funnel plot asymmetry in network meta-analysismetabias.netmeta
Combine network meta-analysis objectsnetbind
Additive network meta-analysis for combinations of treatmentsnetcomb
Calculate comparison effects of two arbitrary complex interventions in component network meta-analysisnetcomparison print.netcomparison
Calculate effect of arbitrary complex interventions in component network meta-analysisnetcomplex print.netcomplex
Get information on network connectivity (number of subnetworks, distance matrix)netconnection netconnection.default netconnection.netcomb netconnection.netmeta netconnection.pairwise print.netconnection
Contribution matrix in network meta-analysisnetcontrib print.netcontrib
Calculate distance matrix for an adjacency matrixnetdistance netdistance.default netdistance.netcomb netdistance.netconnection netdistance.netmeta print.netdistance
Generic function for network graphsnetgraph
Network graph for objects of class discombnetgraph.discomb
Network graph for objects of class netcombnetgraph.netcomb
Network graph for objects of class netconnectionnetgraph.netconnection
Network graph for objects of class netimpactnetgraph.netimpact
Network graphnetgraph.netmeta
Net heat plotnetheat
Determine the importance of individual studies in network meta-analysisnetimpact
Create league table with network meta-analysis resultsnetleague print.netleague
Create a matrix with additional information for pairwise comparisonsnetmatrix
Measures for characterizing a network meta-analysisnetmeasures
Network meta-analysis using graph-theoretical methodnetmeta print.netmeta
Network meta-analysis of binary outcome datanetmetabin
Conduct pairwise meta-analyses for all comparisons with direct evidence in a network meta-analysisbaujat.netpairwise forest.netpairwise funnel.netpairwise metabias.netpairwise metacum.netpairwise metainf.netpairwise metareg.netpairwise netpairwise plot.netpairwise print.metabias.netpairwise print.metacum.netpairwise print.metainf.netpairwise print.metareg.netpairwise print.netpairwise print.summary.netpairwise print.trimfill.netpairwise radial.netpairwise summary.netpairwise trimfill.netpairwise
Partial order of treatments in network meta-analysisnetposet print.netposet
Frequentist method to rank treatments in networknetrank print.netrank
Split direct and indirect evidence in network meta-analysisnetsplit print.netsplit
Table with network meta-analysis resultsnettable print.nettable
Scatter plot or biplot showing partially order of treatment ranksplot.netposet
Plot treatment ranking(s) of network meta-analysesplot.netrank
Plot rankogramsplot.rankogram
Print method for objects of class decomp.designprint.decomp.design
Print method for objects of class netbindprint.netbind
Print method for objects of class netcombprint.netcomb
Print method for objects of class netimpactprint.netimpact
Print method for rankogramsprint.rankogram
Print detailed information for component network meta-analysisprint.summary.netcomb
Print detailed results of network meta-analysisprint.summary.netmeta
'Comparison-adjusted' radial plotradial.netmeta
Generic function for rankogramsrankogram
Calculate rankogram from treatment effect samplesrankogram.default
Calculate rankogramrankogram.netmeta
Network meta-analysis in diabetesSenn2013
Print and change default network meta-analysis settings in R package *netmeta*settings.netmeta
Network meta-analysis of interventions for smoking cessationsmokingcessation
Network meta-analysis of adjuvant treatments to levodopa therapy for Parkinson's diseaseStowe2010
Subgroup analysis for network meta-analysisprint.subgroup.netmeta subgroup subgroup.netmeta
Summary method for objects of class netcombsummary.netcomb
Summary method for objects of class netconnectionprint.summary.netconnection summary.netconnection
Summary method for objects of class netmetasummary.netmeta
Abbreviate treatment namescomps treats
Count statistics of survival dataWoods2010